About ROSIE

ROSIE is a web front-end to the Rosetta 3.x software suite, a molecular modeling software package that provides experimentally tested and rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins, nucleic acids, and a growing number of non-natural polymers.

ROSIE is an easy-to-use web interface for selected Rosetta protocols.

The ROSIE framework is developed by Sergey Lyskov at GrayLab at JHU and has been described in a paper in PLoS One. Apps are developed in various labs participating in the Rosetta Commons. Please see each app’s documentaion for details and contact information. Primary user support contact is through the Rosetta Forum. If you have a question or wish to report a problem with particular ROSIE app, please use the ROSIE sub forum For questions about a Rosetta protocol in general, please use Rosetta Application Forum.



Some ROSIE Statistics:

GrayLab.Rosetta

Protocol jobs
supercharge 785
rna_denovo 4802
snug_dock 1615
pka 1078
peptiderive 5760
ligand_docking 11992
make_exemplar 283
tox_dock 243
rnp_ddg 63
stepwise 82
rna_redesign 76
docking 403
fixbb 1
docking2 11695
mp_lipid_acc 1785
symmetric_docking 1839
antibody 2734
farfar2 825

GrayLab.Jazz

Protocol jobs
supercharge 1504
rna_thread 13
rna_info 35
rna_denovo 435
snug_dock 1048
auto_drrafter 6
ligand_docking 9164
tox_dock 110
docking2 5460
symmetric_docking 14
pka 738
docking 3424
renumber_pdb 27
vip 912
sequence_tolerance 1636
beta_peptide_design 43
meta 3
mp_lipid_acc 347
rnp_ddg 33
erraser 509
antibody 2808
ncbb_design 75
farfar2 395

TACC.Stampede

Protocol jobs
fixbb 1
snug_dock 80
pka 533
peptiderive 368
ligand_docking 1397
make_exemplar 45
tox_dock 24
docking2 4740
antibody 2848
Back-end users
GrayLab.Rosetta 2652
GrayLab.Jazz 2519
TACC.Stampede 1113

App introduced total jobs accumulated usage
in CPU-h
average CPU-h
per job
<jobs/month>
6-month average
<CPU-h/month>
6-month average
docking Jan 2012 27,224 804,992 29.6 143 3,066.2
rna_denovo Feb 2012 5,336 212,554 39.8 22 77.4
erraser Oct 2012 560 1,352 2.4 17 61.4
beta_peptide_design Nov 2012 45 4 0.1 1 0.1
supercharge Nov 2012 2,518 639 0.3 33 7.2
antibody Dec 2012 9,323 4,860,513 521.3 78 53,974.4
ncbb_design Dec 2012 83 9,956 119.9 1 38.6
sequence_tolerance Jan 2013 1,785 114,322 64.0 20 850.9
vip Mar 2013 988 8,422 8.5 7 74.8
symmetric_docking Aug 2013 1,937 202,632 104.6 24 660.4
rna_redesign Oct 2013 76 689 9.1 0 0.0
pka Jan 2014 2,396 19,237 8.0 33 268.7
ligand_docking Jan 2014 22,955 550,624 24.0 172 1,916.8
peptiderive May 2015 6,361 850 0.1 82 8.6
make_exemplar Sep 2015 334 14 0.0 2 0.0
tox_dock May 2016 396 422,600 1,067.2 2 8,649.8
snug_dock May 2016 4,172 2,597,904 622.7 59 45,024.5
mp_lipid_acc Aug 2016 2,141 18 0.0 5 0.0
stepwise Dec 2017 83 6,877 82.9 0 0.0
farfar2 Sep 2018 1,392 1,568,150 1,126.5 64 66,221.5
rnp_ddg Oct 2018 99 3,338 33.7 2 57.0
rna_info Jan 2020 36 0 0.0 1 0.0
renumber_pdb Jan 2020 27 0 0.0 3 0.0
rna_thread Jan 2020 15 0 0.0 2 0.0
auto_drrafter Feb 2020 6 1,800 300.0 0 0.0
Total 90288 11,387,487 166.6 773 180,958.2


Users:

Jobs:

Average waiting time in queue:

Jobs by Back-end:

Monthly CPU Usage (in CPU-hours):

CPU Demand (cumulative CPU-h averaged over 6 months):

Total CPU Usage by Back-end (in CPU-hours):

Total CPU Usage (in CPU-hours):