Antibody Job 3clf 「№1489」 Detail
Inputs | Status |
[Light Chain]
DIVMTQSQKFMSTSVGDRVSISCKASQNVGNIIAWYQQKP
GQSPKALIYLASYRYSGVPDRFTGSGSGTDFTLTISNVQS
EDLAEYFCQQYSSFPLTFGAGTKLELKRADAAPTVSIFPP
SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL
NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT
STSPIVKSFNRNEC
|
[Heavy Chain]
QAYLQESGAELVRPGASVKMSCKASGYRFTSYNMHWVKQT
PRQGLEWIGAIYPGNGDTSYNQKFKGKATLTVDKSSSTAY
MQLSSLTSEDSAVYFCARGRLSLGFDYWGQGSTLTVSSAK
TTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN
SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITC
NVAHPASSTKVDKKIEPRGP
|
|
| Job ID | 1489 |
| Job Name | 3clf |
| Visibility |
PUBLIC
|
| Protocol | antibody |
| CPU hours used | 223.492866242 |
| user | luisa |
| Status | Failed
* Tech support has been notified of this error.
|
| Description | |
| Model H3 loop | True |
| Multiple-Template Grafting | False |
|
| Submitted time | 2013-02-06 08:49 |
| Start time | 2013-02-06 09:08 |
|
| Daemon | GrayLab.Jazz |
|
Antibody script failed with message: Could not find output/details/... creating it...
Rosetta Antibody script [Python, version 2.0]. Starting...
Prefix: output/
Blast database: /home/rosie/rosie/rosie.back/data/antibody/scripts/blast_database
Antibody database: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database
rosetta_bin: /home/rosie/rosie/rosie.back/data/antibody/bin [platform: static.linuxgccrelease]
rosetta_databse: /home/rosie/rosie/rosie.back/data/antibody/rosetta_database
Light chain: 'DIVMTQSQKFMSTSVGDRVSISCKASQNVGNIIAWYQQKPGQSPKALIYLASYRYSGVPDRFTGSGSGTDFTLTISNVQS EDLAEYFCQQYSSFPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC'
Heavy chain: 'QAYLQESGAELVRPGASVKMSCKASGYRFTSYNMHWVKQTPRQGLEWIGAIYPGNGDTSYNQKFKGKATLTVDKSSSTAY MQLSSLTSEDSAVYFCARGRLSLGFDYWGQGSTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGP'
CDR: {
"FRH": "QAYLQEELVRPGASVKMSCKASWVKQEWIGATLTVDKSSSTAY MQLSSLTSEDSAVYFCARWGQGSTLTVSSA",
"FRL": "DIVMTQFMSTSVGDRVSISCWYQQKALIYGVPDRFTGSGSTLTISNVQS EDLAEYFCFGAGTKLELKRA",
"FR_H1": "QAYLQESGAELVRPGASVKMSCKAS",
"FR_H2": "WVKQTPRQGLEWIG",
"FR_H3": "ATLTVDKSSSTAY MQLSSLTSEDSAVYFCAR",
"FR_H4": "WGQGSTLTVSSA",
"FR_L1": "DIVMTQSQKFMSTSVGDRVSISC",
"FR_L2": "WYQQKPGQSPKALIY",
"FR_L3": "GVPDRFTGSGSGTDFTLTISNVQS EDLAEYFC",
"FR_L4": "FGAGTKLELKRA",
"H1": "GYRFTSYNMH",
"H2": "AIYPGNGDTSYNQKFKGK",
"H3": "GRLSLGFDY",
"L1": "KASQNVGNIIA",
"L2": "LASYRYS",
"L3": "QQYSSFPLT",
"heavy": "QAYLQESGAELVRPGASVKMSCKASGYRFTSYNMHWVKQTPRQGLEWIGAIYPGNGDTSYNQKFKGKATLTVDKSSSTAY MQLSSLTSEDSAVYFCARGRLSLGFDYWGQG",
"light": "DIVMTQSQKFMSTSVGDRVSISCKASQNVGNIIAWYQQKPGQSPKALIYLASYRYSGVPDRFTGSGSGTDFTLTISNVQS EDLAEYFCQQYSSFPLTFGAG",
"light_heavy": "DIVMTQSQKFMSTSVGDRVSISCKASQNVGNIIAWYQQKPGQSPKALIYLASYRYSGVPDRFTGSGSGTDFTLTISNVQS EDLAEYFCQQYSSFPLTFGAGQAYLQESGAELVRPGASVKMSCKASGYRFTSYNMHWVKQTPRQGLEWIGAIYPGNGDTSYNQKFKGKATLTVDKSSSTAY MQLSSLTSEDSAVYFCARGRLSLGFDYWGQG"
}
Running blast as: /home/rosie/prefix/blast+/bin/blastp
With datbase in:/home/rosie/rosie/rosie.back/data/antibody/scripts/blast_database
The template for FRL is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for FRH is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for light is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for heavy is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for L1 is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for L2 is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for L3 is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for H1 is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
WARNING: There is no template avaliable for H2 after filtering! A ramdom template which has the same length as the query was chosen...
The template for H2 is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3uls_chothia.pdb
The template for H3 is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
The template for light_heavy is derived from: /home/rosie/rosie/rosie.back/data/antibody/scripts/antibody_database/pdb3clf_chothia.pdb
Traceback (most recent call last):
File "/home/rosie/rosie/rosie.back/data/antibody/scripts/antibody.py", line 1050, in <module>
if __name__ == "__main__": main(sys.argv)
File "/home/rosie/rosie/rosie.back/data/antibody/scripts/antibody.py", line 195, in main
thread_template_pdbs(CDRs, prefix=prefix_details)
File "/home/rosie/rosie/rosie.back/data/antibody/scripts/antibody.py", line 735, in thread_template_pdbs
if r['resName'] == AA_Code[ CDRs[numbering][res_num_icode] ] or r['name'] in [' N ', ' CA ', ' C ', ' O ']:
KeyError: ' '
[Input files (FS view)]