rna_thread Server Documentation





Overview:

rna_thread is a tool for threading a new sequence onto an RNA structure. At the moment, this protocol expects a structure containing only RNA residues, and an all-lowercase sequence of RNA to be imposed on that structure.



Please cite the following article when referring to results from our ROSIE server:

  1. Watkins, A. M.; Das, R. "FARFAR2: Improved de novo Rosetta prediction of complex global RNA folds. bioRxiv 764449; doi: https://doi.org/10.1101/764449

  2. Lyskov S, Chou FC, Conchúir SÓ, Der BS, Drew K, Kuroda D, Xu J, Weitzner BD, Renfrew PD, Sripakdeevong P, Borgo B, Havranek JJ, Kuhlman B, Kortemme T, Bonneau R, Gray JJ, Das R., "Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)". PLoS One. 2013 May 22;8(5):e63906. doi: 10.1371/journal.pone.0063906. Print 2013. Link

We welcome scientific and technical comments on our server. For support please contact us at Rosetta Forums with any comments, questions or concerns.


Modeling tools developed by the Das Lab at Stanford University. The Rosie implementation was developed by Andrew Watkins and Sergey Lyskov.